Where is Detective Conan: Magician of the Silver Sky set?

2004 anime film directed by Yasuichiro Yamamoto

Detective Conan: Magician of the Silver Sky (2004): 1 real place Wikidata records as its setting in Japan. Where the anime takes place, not where it was made: an anime is drawn and filmed nowhere, so this is the only kind of location it has.

Part of the Detective Conan film series

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Where it is set

Also per Wikipedia's article

The Wikipedia article names 2 more places. Each links to the sentence that says so.

Filmed in the same places

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Set in the same places

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More set in Japan